VCF
Specification
https://vcftools.github.io/specs.html
PLINK
PED/MAP or BED/BIM/FAM
Specification
https://www.cog-genomics.org/plink2/formats#bed
http://pngu.mgh.harvard.edu/~purcell/plink/data.shtml#ped
SAM/BAM
Specification
https://samtools.github.io/hts-specs/
BED and GTF/GFF
Specification
BED http://asia.ensembl.org/info/website/upload/bed.html
GTF/GFF http://asia.ensembl.org/info/website/upload/gff.html
FASTA/FASTQ
Specification