Repo: https://github.com/MerrimanLab/QTL_pipelines
This pipeline runs a co-localisation analysis using a list of key SNPs, a GWAS results file, and the GTEx dataset.
bash cis_eqtl_pipeline.sh my_gwas.txt my_snplist.txt 1000000 8
Repo: https://github.com/MerrimanLab/QTL_pipelines
This pipeline runs a co-localisation analysis using a list of key SNPs, a GWAS results file, and the GTEx dataset.
bash cis_eqtl_pipeline.sh my_gwas.txt my_snplist.txt 1000000 8